Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQEL---VRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
3M9Y Chain:B ((2-254))
MRTPIIAGNWKMNKTVQEAKDFVNALPT-LPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
General information:
TITO was launched using:
RESULT:
Template:
3M9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121419 for 2131 contacts (-57.0/contact) +
2D Compatibility (PS) -27563 + (NN) -13947 + (LL) -80
1D Compatibility (HY) -23600 + (ID) 7950
Total energy: -194559.0 ( -91.30 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_3M9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M9Y-query.scw
PDB file :
Tito_Scwrl_3M9Y.pdb
: