Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQLFFRYGSMNSGKTIEILKVAHNYEEQNKTVAIFTSGIDDRDQVGFISSRIGLKREATPIFSDTNIFEIVVNIKPKPNCVLLDESQFLEKEHVFQLAKIVDELNIPVIAYGLKNDFRNELFEGSKYLLLYADKLEEMKTICWFCAK-KATMVLRVDDKGKPVYTGEQIMIGGNDHYYPVCRKCHANPPIK
2QPO Chain:C ((10-177))
--------GPMYSGKTTELLSFVEIYKLGKKKVAVFKP-------------------EAHVIERPE---EMRKYIEEDTRGVFIDEVQFFNPS-LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKV-------------------KYIAVCRDCY------
General information:
TITO was launched using:
RESULT:
Template:
2QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72182 for 990 contacts (-72.9/contact) +
2D Compatibility (PS) -14556 + (NN) -3716 + (LL) 2420
1D Compatibility (HY) -10400 + (ID) 2350
Total energy: -100784.0 ( -101.80 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_2QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QPO-query.scw
PDB file :
Tito_Scwrl_2QPO.pdb
: