Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKQVALYIAVSLDGYIADENGSVEWLESIDSEGDAGYEAFFDNVDTVVMGRTTYQQIFS-LTDT---F-PYSKKDVYVFSNTKAGTKDEYADFVAGTVDTWLNNID---GEKIWLVGGAKLVQQFLKERAIDRFVITIAPIILGKGIPLFEED-QEHALELEEVTRFGQ-FAQLTYKNLEEN
2GD9 Chain:A ((6-187))
LKQRRIILDLAVTLDGFIEGKNGEVDWCIMDPD---MGFTDFLNQIDTILYGRKSFDLWGQY----KELWKLVHSKKKYVFSRTQNEI-DNQAIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFINLGLVDEFRLSIHPVVLGEGKPLFIDVKQRINLKMVNTRTFSSGVVQIVYHW----
General information:
TITO was launched using:
RESULT:
Template:
2GD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89465 for 1149 contacts (-77.9/contact) +
2D Compatibility (PS) -16861 + (NN) 570 + (LL) 428
1D Compatibility (HY) -17600 + (ID) 2550
Total energy: -125478.0 ( -109.21 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_2GD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GD9-query.scw
PDB file :
Tito_Scwrl_2GD9.pdb
: