Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDT-KALIVVAG---ESENVELSARNLQGITVIPA---------------ESISVLEVAKHDKLIITKAAVEKVEEVLA
1DMG Chain:A ((1-225))
-AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLS-----------------------------------------------------DWSKKLNKKMKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVLG
General information:
TITO was launched using:
RESULT:
Template:
1DMG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108463 for 1176 contacts (-92.2/contact) +
2D Compatibility (PS) -16992 + (NN) -10258 + (LL) 1340
1D Compatibility (HY) -19600 + (ID) 2950
Total energy: -156923.0 ( -133.44 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1DMG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DMG-query.scw
PDB file :
Tito_Scwrl_1DMG.pdb
: