Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VEIKQIK----AKDTQDIRHRVLRPEQPEENAIYPNDDMEGTFHLGAFEKDVLLGVASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLAEGEAEIWTRGADIIWCNARIVAVGFYEKHGYRKVGKSFVIPGIGEHYLMKKVNPNKKVDQDN
1Q2Y Chain:A ((1-140))
MKAVIAKNEEQLKDAFYVREEVFVKEQNVPAEEEIDELENESEHIVVYDGEKPVGAGRWRMKDG-------YGKLERICVLKSHRSAGVGGIIMKALEKAAADGGASGFILNAQTQAVPFYKKHGYRVLSEKEFLDAGIPHLQMMKD----------
General information:
TITO was launched using:
RESULT:
Template:
1Q2Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49834 for 1049 contacts (-47.5/contact) +
2D Compatibility (PS) -14367 + (NN) -4676 + (LL) 488
1D Compatibility (HY) -1200 + (ID) 1450
Total energy: -71039.0 ( -67.72 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_1Q2Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q2Y-query.scw
PDB file :
Tito_Scwrl_1Q2Y.pdb
: