Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSPEYMLSHTCLVREPEKFYQFVTENMYYP-NAVPNVIHKKMAEIETEKDVT-IITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNC--GMTVTAKDYLKSDIHTD-CGGVIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLT-DYRNKKARIFAVNKERISL-PYPFEMMESDAVKVFEEI
1M2N Chain:B ((4-236))
--KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLW-NRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDEL
General information:
TITO was launched using:
RESULT:
Template:
1M2N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131941 for 1862 contacts (-70.9/contact) +
2D Compatibility (PS) -24241 + (NN) -10393 + (LL) 272
1D Compatibility (HY) -14000 + (ID) 3850
Total energy: -184153.0 ( -98.90 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1M2N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2N-query.scw
PDB file :
Tito_Scwrl_1M2N.pdb
: