Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTFIVKKEHISQYPNPLFVNKNESIWVFEEDTEYPGWIFCKVKSSGKEGWIPKQIIQISNDG------------KSGTVSEDYSAR---ELNVKPGDKLESNRE-LNGWVWCVTEENEAGWVPRENLEV
1NG2 Chain:A ((159-282))
--QTYRAIADYEKTSGSEMALSTGDVVEVVEKSE--SGWWFCQMK--AKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR-KDDVTGYFPSMYLQK
General information:
TITO was launched using:
RESULT:
Template:
1NG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13875 for 553 contacts (-25.1/contact) +
2D Compatibility (PS) -11932 + (NN) -3489 + (LL) 320
1D Compatibility (HY) -6800 + (ID) 1250
Total energy: -37026.0 ( -66.95 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_1NG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NG2-query.scw
PDB file :
Tito_Scwrl_1NG2.pdb
: