Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANLSELPNIGKVLEQDLIKAGIKTPAELKDVGSKEAFLRIWE-NDSSVCLSELCALEGAVQGIRWHDLDEAKKSELKKFHQSL
3GQC Chain:A ((644-705))
-QLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGPKTG-----QMLYRFCRGLDDRPVRT----------------
General information:
TITO was launched using:
RESULT:
Template:
3GQC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11251 for 389 contacts (-28.9/contact) +
2D Compatibility (PS) -6665 + (NN) -2238 + (LL) 1876
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -22028.0 ( -56.63 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3GQC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GQC-query.scw
PDB file :
Tito_Scwrl_3GQC.pdb
: