Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNELEDKILAILEQHQVGVLTSVQGDYPHARYMTFLHDGLTLYTPSGKELPKTDEVRRNPHVSVLIGYESPGSAFLEINGLASLEEDESIKERIWENISKEWFRGEDSPSFVVIKIVPEQIRILNSDDDGPDTLDLIG
3DB0 Chain:A ((1-126))
MENELEDKILAILEQHQVGVLTSVQGDFPHARYMTFLHDGLTLYTPS----PKTEEVRRNPHVCVLIGYDSPGSAFLEINGLASLEEDESIKERIWENISKDWFQ------FVVIKIVPEQIRILN-------------
General information:
TITO was launched using:
RESULT:
Template:
3DB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39868 for 707 contacts (-56.4/contact) +
2D Compatibility (PS) -12168 + (NN) -1857 + (LL) -388
1D Compatibility (HY) 6000 + (ID) 350
Total energy: -48631.0 ( -68.79 by residue)
QMean score : 0.187
(partial model without unconserved sides chains):
PDB file :
Tito_3DB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DB0-query.scw
PDB file :
Tito_Scwrl_3DB0.pdb
: