Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFLSIIILVTLIIGNVMFFNFISNTLSRDFLFKEQTVVQFKYKEDYQVSDFNNSIKTFSETKNINIAQYTFLGERDLNIYGSNCQFAPNINLKKGDYPNKNQFLANEESVDKKQSGVIYHPSKYWSLKVYDFGQIKNVGLSDTFYVSGLDNQNTYQAFLKEFEQYGEVTTKSVDVSWWKYINIPLLMTLLLCFAILFVFTYYYLRYSKQRLLVNRIWGNSELVTLMSLFNKTIIFTLFSVLAILITFVSIVLANGLATYLVEIVWKLLLFNVLLFIFILFPMYFFGLLRIKKIDQAKSDQRMQSSRQHLAINLVIKFVLLCLFIGTFIASYQSLQTLNTRLANIDVWEATKDIFKVKVGVLPEGIQDDLKADKELNDNLSAFYEEGTSKKEMFLMYSNNFQRSETNTFFYETYLKKGSEINSPEGNSVEIDFNYLKLNPIKSIKGQNVGKEAIISDKVLNIIVPNSKKGLEKDIKNTFLDYFYFQKVEVANIYNEALDLPAVALSKEDLRVNIIYAENNQDYFSYDSNTGDFRTGNITDPIAIVYTGNIDSSSIGAHVTSSVYFVDKSNGDAFNAILPLISNSNAREITHVRSVYQEVSSEITTLKWQIYQQLIGTIILALCLCSFMVLLVLSYYRENLYKQLIYHVFGYSFWKSSKWFIISNLFVSVFSGILIFILSKEPVALYFSVVILIIELCAIYFIKEKAIYKDFKAILKGEKYD |
| 1VYT Chain:E ((1-25)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QKLREKQQLEEDLKGYLDWITQAED----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 4972 for 93 contacts (53.5/contact) +
2D Compatibility (PS) -2695 + (NN) -1402 + (LL) 56000
1D Compatibility (HY) -2000 + (ID) 200
Total energy: 54675.0 ( 587.90 by residue)
QMean score : 0.581
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