Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGNSVMEKIKGGLVVSCQALEDEPLHSAFIMSKMALAAVQGGAVGIRANTAKDIRAIQSEIDVPIIGIYKKDYDDSDVFITPTLKEVREICETGVEIVAMDATTRKRPHNEDLKDILSAIRKEFPNTLFMADTASIEDVYYADSLGFDLIGTTLYGYTEETANKNISDDDFSHLKEVLKSTKRPVIAEGKIDSPSKARQVLTLGCYAVVVGGAVTRPQEITTRFTNEIQKIQEERGK
4UTW Chain:B ((10-227))
----MLDVVKGNLIVSCQALSDEPLHSSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITPTMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK--GRLAMADISTLEEGIEAEKLGFDCVSTTLSGYTPYSKQSN--SVDFELLEELVKTVKIPVICEGRINTPEELKKALDLGAYSAVVGGAITRPQQITKRFTD-----------
General information:
TITO was launched using:
RESULT:
Template:
4UTW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132408 for 1911 contacts (-69.3/contact) +
2D Compatibility (PS) -23555 + (NN) -11030 + (LL) 1096
1D Compatibility (HY) -21200 + (ID) 5650
Total energy: -192747.0 ( -100.86 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_4UTW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UTW-query.scw
PDB file :
Tito_Scwrl_4UTW.pdb
: