Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------------------------------------------------------------------------------------MTKGILGKKVGMTQIFTESGEFIPVTVIEATPNVVLQVKTVETDGYEAVQVGFDDKREVLSNKPAKGHVAKANTAPKRFIREFKNIEGLEVGAELSVEQFEAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSR-YHRRPGSMGPVAPNRVFKNKRLAGRMGGNRVTVQNLEIVQVI----------------PEKNVVLIKGNVPGAKKSLITIKSAVKAAK------------------ |
| 1JJ2 Chain:B ((1-337)) | PQPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTV--PDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHA-------------------MNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPNDQPRLDPEVRYVSNESNQG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JJ2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4370 for 1039 contacts (-4.2/contact) +
2D Compatibility (PS) -20101 + (NN) -5845 + (LL) 1792
1D Compatibility (HY) -400 + (ID) 2300
Total energy: -31224.0 ( -30.05 by residue)
QMean score : 0.280
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