Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKEDVIEIEGKVVETMPNAMFTVELENGHQILATVSGKIRKNYIRILVGDRVTVEMSP-YDLTRGRITYRFK
2DGY Chain:A ((21-89))
---PSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLC
General information:
TITO was launched using:
RESULT:
Template:
2DGY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21311 for 418 contacts (-51.0/contact) +
2D Compatibility (PS) -7402 + (NN) -998 + (LL) 336
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -31375.0 ( -75.06 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_2DGY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DGY-query.scw
PDB file :
Tito_Scwrl_2DGY.pdb
: