Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDAGVHAYGQVIHFDLPQARDVEKLRFGLDTQCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIGRPKNPMMRNYATHYPYPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQFEASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGNGLYLKEIIYEDKECFSNFRK
1DJ0 Chain:A ((3-252))
VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH--GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPM
General information:
TITO was launched using:
RESULT:
Template:
1DJ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151315 for 2080 contacts (-72.7/contact) +
2D Compatibility (PS) -27064 + (NN) -12370 + (LL) -56
1D Compatibility (HY) -18400 + (ID) 4150
Total energy: -213355.0 ( -102.57 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_1DJ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DJ0-query.scw
PDB file :
Tito_Scwrl_1DJ0.pdb
: