Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNMMKYISELTTLIALAGLMVIITLINPNFLTTNNLLNLLLQVTANGFIAFGMTFVILTGGIDLSVGSILALSSALTAGLIGHGVPVGIAIVLSVALGGILGMLNGLFISYGKLAPFIVTLATMTIFRGATLVYSNGNPITAG-LSDSFLFQFLGQGYIVGIPFPVILMFLTFIILYILLHKTAFGKSVYALGGNEKAAYISGIKLNKVKIIIYTISGIMASISGLIITSRLSSAQPTAGASYEMDAIAAVVLGGTSLSGGKGRIIGTLIGALIIGVLNNGLNIIGVSAFWQQVVKGIVILMAVLLDRFKVAK |
| 3VK5 Chain:A ((21-273)) | APPLWRPGRVLARLREHQPG--PVHIIDPFKVPVTEAVEKAAELTRLG------FAAVLLAS---TDYESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFPVVRGAD------ALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYLHVARAFGFHMVYLY-------------------------SRNEHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDS-----------GADYVGFAGALEQ--PDWRSALAEIAG------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VK5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -252808 for 2134 contacts (-118.5/contact) +
2D Compatibility (PS) -26194 + (NN) 11 + (LL) 5748
1D Compatibility (HY) 6800 + (ID) 1250
Total energy: -267693.0 ( -125.44 by residue)
QMean score : 0.206
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