Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTGILNSHLAKLADDLGHTDRVCIGDLGLPVPNGIPKIDLSLTSGIPSFQEVLDIYLENILVEKVILAEEIKEANPDQLSRLLAKLDNSVSIEYVSHDHLKQMTQDVKAVIRTGENTPYSNIILQSGVII
1OGF Chain:C ((1-131))
MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDGVLKIDLSLKPGLPAFQDTAAVLAEEMAVEKVIAAAEIKASNQEN-AKFLENLFSEQEIEYLSHEEFKLLTKDAKAVIRTGEFTPYANCILQAGVLF
General information:
TITO was launched using:
RESULT:
Template:
1OGF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75955 for 1009 contacts (-75.3/contact) +
2D Compatibility (PS) -14485 + (NN) -9092 + (LL) 176
1D Compatibility (HY) -13200 + (ID) 3700
Total energy: -116256.0 ( -115.22 by residue)
QMean score : 0.671
(partial model without unconserved sides chains):
PDB file :
Tito_1OGF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OGF-query.scw
PDB file :
Tito_Scwrl_1OGF.pdb
: