Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIITSILLLSCIFFMPTISAESFNASAKYALAVDLDSGKILYEKDANRPAAIASLTKIMTVYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEKR-RYTVKQLVDAAMISSANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKTGTTELAGQSFIATST-ESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLAKGATYKGKEASVRDGKEQSVIAVAKNDLKVAQKKNITKQNQLKIN-FKKELTAPITKKENLGKAYYVDLNKVGKGYLIKEPSVHLVAKDSIERSFFLKVWWNHFVRYVNEKL |
| 3A3J Chain:A ((3-344)) | ----------------------TPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRN-FPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDP--------------NQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDK---TINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTY----KGREVESKKLLQWGFANFETFKTLEAGKEI--SEQRVYYGDKNSVKLGAFMDHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYALDGK-D---I---ASANLQVMNDVGE------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3A3J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131783 for 2875 contacts (-45.8/contact) +
2D Compatibility (PS) -35873 + (NN) -4963 + (LL) 5356
1D Compatibility (HY) -14800 + (ID) 4750
Total energy: -186813.0 ( -64.98 by residue)
QMean score : 0.524
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