Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLSKQLYKSLPLLTVVLCVGALQQNVEAKAKHYKTTSHVETQYVSTSSKKILPFTHNKQIKVGPLDNLGRATYSHIQLRDADEPKIKRERLTYNPTGWHNYKFTTEKGKTTWLMDRGHLVGYQFSGMNNVPENLVTMTKYLNT--GFSEN--NPDGMLYYENRLDSWLANHKNFWLDYKVTPIYEGNNLVPSRVELQYVGIDKQGKLLEIKLGGGKEQTDEYGVTTVTLENTSPLAKIDYKTGMLIKEDGKQAEEGEDPNSDADENEAAIESASDIEENTNTNTSESDTNNVAPKNRIVYVANKGRSNTYWYSLENIKNANTANIVQMTEQEALNQHKHHSTTEAQ |
| 3SQG Chain:B ((227-303)) | -----------------------------------------------------------------------------------------------------------------PHERGHLLDLAYEGLN--ANNLLYSLIKDNGQDGSLGDVIYAAVEKAKADGVIKSLKKMPSGFTVYDADDMQLWNAYACTAMLAGVCVNCASMRAGQPVPGNIMQACCLIERETGLPGPDFGMAQGASVSSSFFSHSIYGGGGPGVFYGNHIVTRHAKGQFIPCFCAAMCIDADTMYFSPARTSALYGEVLGAIPEFAEPMRAVAEAAK------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SQG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3326 for 413 contacts (-8.1/contact) +
2D Compatibility (PS) -7532 + (NN) -1596 + (LL) 9036
1D Compatibility (HY) 1200 + (ID) 650
Total energy: -2868.0 ( -6.94 by residue)
QMean score : -0.180
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