Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYKKYQIIYAPDVLEKLKEIRDYISQNYSSTSGQRKMEQIINDIEKLEVFPEVGFD--ADEKYGS-EISNYHSTRGYTLSKDYIVLYHIEEEENRVVIDYLLPTRSDYMKLFK
1WMI Chain:A ((1-88))
---MTYRVKIHKQVVKALQSLPK------------AHYRRFLEFRDILEYEPVPREKFDVIKLEGTGDLDL----YRARLG-DYRVIYSVNWKDKVIKILKLKPRGRA------
General information:
TITO was launched using:
RESULT:
Template:
1WMI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33820 for 541 contacts (-62.5/contact) +
2D Compatibility (PS) -9301 + (NN) -4719 + (LL) 1500
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -51490.0 ( -95.18 by residue)
QMean score : 0.660
(partial model without unconserved sides chains):
PDB file :
Tito_1WMI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WMI-query.scw
PDB file :
Tito_Scwrl_1WMI.pdb
: