Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIDKKEFLALIASIILLIFASVTFFLFKDHGTTQMDTVESSVNHVSDSQLTEAQDMLDKFEKKPSEKLLKDVELALNKLSNSSKKEALQKRFKKAKDKYLKDEADKKATKDATDLVEILEQAPSEENVLKAEAAVNK--LTVKESKEALQKRIDTVKTQYGLIGNQTPSSSVAETTEQGTANPASQDTSSYVNQNVAPTYEQPQTNNTPVTPGVNNTVPTPGTGTAPATNGTGVAQ |
2GOM Chain:A ((105-165)) | -------------------------------------------------------------------------------------------------------IKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQ-GLVR------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GOM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2905 for 364 contacts (8.0/contact) +
2D Compatibility (PS) -6562 + (NN) -4966 + (LL) 9688
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -3135.0 ( -8.61 by residue)
QMean score : 0.661
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