Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFEHVSKVYGEKEALSDLTLSIKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDL---LLTEHRDQIKKKIGYVPDSPDIFLNLTAEEYWYFLAKIYD-VAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPLTGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMQYPDKDLETIYLELAGRQANREG
4P33 Chain:B ((6-234))
----KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLH-ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDQPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI---LQDEHVKRVYLG----------
General information:
TITO was launched using:
RESULT:
Template:
4P33.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140242 for 1782 contacts (-78.7/contact) +
2D Compatibility (PS) -24775 + (NN) -10688 + (LL) 1840
1D Compatibility (HY) -16800 + (ID) 3700
Total energy: -194365.0 ( -109.07 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_4P33.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P33-query.scw
PDB file :
Tito_Scwrl_4P33.pdb
: