Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFHTKSLIQMAMMATLLVVLGFIPALPLGFIPVPIVLQNLGVMMAGVILGGRKGSLSILLFFLVGLVIPVFSGLRSTIPVLTGPTAGYVIAWLFVPLLISYGVKLVNKKNFIAIFLIVWLAGVLFVDVAGAVWLASYTNIPLDKSLLQNLVF----IPGDTIKAIIAAVVAVKYKDSFFLTEK
1THZ Chain:B ((393-431))
------------------------------------------------------------------------------------------------------------------------------------------NAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYA
General information:
TITO was launched using:
RESULT:
Template:
1THZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18014 for 143 contacts (-126.0/contact) +
2D Compatibility (PS) -3597 + (NN) -534 + (LL) 12496
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -13949.0 ( -97.55 by residue)
QMean score : 0.699
(partial model without unconserved sides chains):
PDB file :
Tito_1THZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1THZ-query.scw
PDB file :
Tito_Scwrl_1THZ.pdb
: