Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTVKVVYFSSKSNNTHRFVQKLAWSNQRIP-SDGSNILVTEDYILIVPTYAGGGDDTKGAVPKQVVQFLNVRQNREHCQGVISSGNTNFGDTYAIAGPIIARKLNVPLLHQFELLGTQEDVTRVKELLCQFTRKDK
3N39 Chain:D ((23-150))
-----QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGG--TAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQ---
General information:
TITO was launched using:
RESULT:
Template:
3N39.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95769 for 943 contacts (-101.6/contact) +
2D Compatibility (PS) -13808 + (NN) -6459 + (LL) 248
1D Compatibility (HY) -14000 + (ID) 3350
Total energy: -133138.0 ( -141.19 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_3N39.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N39-query.scw
PDB file :
Tito_Scwrl_3N39.pdb
: