Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPEKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYLLGNTDLKNPNDLDIEKVKQSLKKSLGYNGTSDIPEDELESMAQAFIEHFKNQ
1PER Chain:R ((2-63))
-ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENG-KTKRPRFLPELASALGVSVDWLLNGT------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PER.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20790 for 444 contacts (-46.8/contact) +
2D Compatibility (PS) -6882 + (NN) -3640 + (LL) 2640
1D Compatibility (HY) -4000 + (ID) 1100
Total energy: -33772.0 ( -76.06 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_1PER.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PER-query.scw
PDB file :
Tito_Scwrl_1PER.pdb
: