Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRIKPNKKRELLKAKGINWKDVRLSQTLQEVASPKKKAPEAPKAVDLLEGLTANKQDVLKEAGLVSLEAFAKVSEADVLALKGIGPAAIKQLVDNGVVFAK
1PZN Chain:A ((36-84))
---------------------------------------------SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAAN
General information:
TITO was launched using:
RESULT:
Template:
1PZN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19909 for 336 contacts (-59.3/contact) +
2D Compatibility (PS) -5250 + (NN) -1945 + (LL) 3164
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -26590.0 ( -79.14 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_1PZN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PZN-query.scw
PDB file :
Tito_Scwrl_1PZN.pdb
: