Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDIKAEIQKLAKEIGISKIGFTTADNFDYLEKSLRASVEEGRNSGFEHKVIEDRIYPERLLESAKTIISIGVAYPHKLPQQPQKTSYKRGKITPNSWGLDYHYVVGEKLDRLSKGIEELCRDFPLQQKAMVDTGALVDTAVAQRAGIGFIGKNGLVISKEYGSYMFLGELITNLEIEPDKPVDYDCGDCRRCLDACPTSCLIGDG---SMNAKRCLSFQTQDKGMMDIEFRKKIKTVIYGCD------ICQICCPYNKGINNPLATEIDPELAQPELIPFLSLSNGQFKEKFGMIAGSWRGKNILQRNAIIALANAHDKTAVVKLIEIIDKNNNPIHTATAIWALGEIVKKPNDEILEFMSNLTLKDEDSRKELELIRHKWQF |
1RGV Chain:A ((6-58)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDCTACDACVEECPNEAITPGDPIYVIDPTKCS-----------------------ECVGAFDEPQCRLVCPADCIPDNPDYRETREELQEKYDRLHG------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -18942 for 234 contacts (-80.9/contact) +
2D Compatibility (PS) -4719 + (NN) -3456 + (LL) 21020
1D Compatibility (HY) -2800 + (ID) 550
Total energy: -9447.0 ( -40.37 by residue)
QMean score : 0.345
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