Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRLVKIVTIIRNNKIRTLIFVMGSLILLFPIVSQVSYYLASHQNINQFKREVAKIDTNTVERRIALANAYNETLS----RNPLLIDPFTSKQKEGLREYARMLEVHEQIGHVAIPSIGVDIPIYAGTSETVLQKGSGHLEGTSLPVGGLSTHSVLTAHRGLPTARLFTDLNKVKKGQIFYVTNIKETLAYKVVSIKVVDPTALSEVKIVNGKDYITLLTCTPYMINSHRLLVKGERIPYDSTEAEKHKEQTVQDYRLSLVLKILLVLLIGLFIVIMMRRWMQHRQ
3TBE Chain:F ((17-214))
----------------------------------------------INAFKEAVTKIDRVEINRRLELAYAYNASIAGAKT--PALKDPY--------VEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEK-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TBE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108453 for 1448 contacts (-74.9/contact) +
2D Compatibility (PS) -19440 + (NN) -5683 + (LL) 10204
1D Compatibility (HY) -20400 + (ID) 5750
Total energy: -149522.0 ( -103.26 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_3TBE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TBE-query.scw
PDB file :
Tito_Scwrl_3TBE.pdb
: