Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVITVKNDIEGGKIAFTLLEEKMKAGAQT-LGLATGSSPITFYEEIVK----SNLDFSNMVSINLDEYVGIAASNDQSYSYFMHKHLF---DAKPFKENNLPNGLAKDLKEEIKRYDAVINA-NPIDFQILGIGRNGHIGFNEPGTPFDITTHVVDLAPSTIEANSRFFNSIDDVPKQALSMGIGSIMKSKTIVLVAYGIEKAEAIASMIKGPITEDMPASILQKHDDVVIIVDEAAASKL
2BKX Chain:B ((1-239))
MKVMECQTYEELSQIAARITADTIKEKPDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKPSR-HFIPNGNADDLEAECRRYEQLVDSLGDTDIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARYFPSIDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLIDREAASLR
General information:
TITO was launched using:
RESULT:
Template:
2BKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128111 for 1972 contacts (-65.0/contact) +
2D Compatibility (PS) -25317 + (NN) -16185 + (LL) 104
1D Compatibility (HY) -19200 + (ID) 5250
Total energy: -193959.0 ( -98.36 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_2BKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BKX-query.scw
PDB file :
Tito_Scwrl_2BKX.pdb
: