Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYLAPVLTIAGTDPSGGAGIMADLKTFQARRTYGMAVVTSVVAQNTCGVRGVQHIETAIIDQQLACVYDDIKPKAVKTGMLAERETISLVASYLKKYP-QPYVLDPVMVATSGHRLIDSDAVEALKEDLLPLATIITPNLPEAEILV-GYDLSDEVSIIKAGYDIQKQYSVRNVLIKGGHLDGLAKDYLFLEKEGLITLSNQRINTIHTHGTGCTFAAVVAAELAKGQSILNAVSTAKSFITSAIETAP--ELGLGNGPVNHTSYQGD
1JXH Chain:B ((29-283))
-------LTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAENTCGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRHHVRNVVLDTVML------LLSPSAIETLRVRLLPQVSLITPNLPEAAALLDAPHARTEQEMLAQGRALLA-MGCEAVLMKG--------DWLF-TREGEQRF---RVNTKNTHGTGCTLSAALAALRPRHRSWGETVNEAKAWLSAALAQADTLEVGKGIGPVHHFHAWW-
General information:
TITO was launched using:
RESULT:
Template:
1JXH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161614 for 2020 contacts (-80.0/contact) +
2D Compatibility (PS) -24846 + (NN) -4549 + (LL) 1408
1D Compatibility (HY) -18800 + (ID) 5300
Total energy: -213701.0 ( -105.79 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1JXH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JXH-query.scw
PDB file :
Tito_Scwrl_1JXH.pdb
: