Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDT---------KNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
1ZJJ Chain:B ((5-255))
------IFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVSSSIIITSGLATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWGIVTLDEARQGSWKEVKHVVVGLDPDLTYEKLKYATLAIRNGATFIGTNPDATLPGEEGIYPGAGSIIAALKVATNVEPIIIGKPNEPMYEVVREMF--PGEELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIKKSEYKPDLVLPSVYELIDYLK
General information:
TITO was launched using:
RESULT:
Template:
1ZJJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134952 for 2115 contacts (-63.8/contact) +
2D Compatibility (PS) -26955 + (NN) -16139 + (LL) 552
1D Compatibility (HY) -20800 + (ID) 5000
Total energy: -203294.0 ( -96.12 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_1ZJJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZJJ-query.scw
PDB file :
Tito_Scwrl_1ZJJ.pdb
: