Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTATKQHKKVILVGDGAVGSSYAFALVNQGIAQELGIIEIPALFDKAVGDAEDLSHALAFTSPKKIYAATYADCADADLVVITAGAPQKPGETRLDLVGKNLAINKSIVTQVVESGFNGIFLVAANPVDVLTYSTWKFSGFPKERVIGSGTSLDSARFRQALADKIGVDARSVHAYIMGEHGDSEFAVWSHANVAGVQLEQWLQENRDIDEQGLVDLFISVRDAAYSIINKKGATYYGIAVALARITKAILDDENAVLPLSVYQEGQYGDVKDVFIGQPAIVGAHGIVRPVNIPLNDAELQKMQASAEQLKDIIDEAWKNPEFQEASKN |
| 3VKV Chain:D ((7-317)) | ----KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI--FKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP-----TRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYG-LNDIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDAF----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VKV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216783 for 2650 contacts (-81.8/contact) +
2D Compatibility (PS) -32725 + (NN) -11472 + (LL) 764
1D Compatibility (HY) -38000 + (ID) 10450
Total energy: -308666.0 ( -116.48 by residue)
QMean score : 0.623
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