Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKEKMLAGQYYRPSAPELRKDREVALKNMQAFNNEDNSS---KRNVILQKWFGATGKSIHMEQRFVCDYGCNIYVGENFYANFNQTFLDVCEIRIGDNCMFGPNCQLLTPLHPLDPIERNSGLEYGAPIQIGNNVWLGGGVTILPGVVLGDNVVVGAGSVVTKSFENNVVIAGNPAKIIKKLA
3V4E Chain:C ((4-187))
MTEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKID
General information:
TITO was launched using:
RESULT:
Template:
3V4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114457 for 1445 contacts (-79.2/contact) +
2D Compatibility (PS) -20022 + (NN) -10965 + (LL) 0
1D Compatibility (HY) -12800 + (ID) 3700
Total energy: -161944.0 ( -112.07 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_3V4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V4E-query.scw
PDB file :
Tito_Scwrl_3V4E.pdb
: