Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLEERILKDGDVLGENILKVDSFLTHQVDFELMQEIGKVFADKYKEAGITKVVTIEASGIAPAVYAAQALGVPMIFAKKAKNITMTEGILTAEVY-SFTKQVTSQVSIVSRFLSNDDTVLIIDDFLANGQAAKGLLEIIGQAGAKVAGIGIVIEKSFQDGRDLLEKTGVPVTSLARIKAFENGRVVFAEADA
1P4A Chain:C ((95-241))
-----ERILPGGYVYLTDILGKPSVLS---------KVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDN-----EGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVEAEGVDERLVDEYMSLLTLSTINMKEKSIEIQNGNFLRF
General information:
TITO was launched using:
RESULT:
Template:
1P4A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95231 for 1098 contacts (-86.7/contact) +
2D Compatibility (PS) -15536 + (NN) -3771 + (LL) 2184
1D Compatibility (HY) -12800 + (ID) 2550
Total energy: -127704.0 ( -116.31 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1P4A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P4A-query.scw
PDB file :
Tito_Scwrl_1P4A.pdb
: