Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQMNFTDRATRVAIIANGKYQSKRVASKLFAAFKHDPDFYLSKKDPDIVISIGGDGMLLSAFHMYEKQLDKVRFVGVHTGHLGFYTDYRDFEVDTLINNLKNDEGEQISYPILKVTITLEDGRV-IRARALNESTIKRIEKTMVADVVINQVVFERFRGDGILVSTPTGSTAYNKSLGGAVLHPTIEALQLTEISSLNNRVYRTLGSSVIIPKKDAIEIVPKRVGVYTISIDNKTVHYKNVTKIEYSIDEKSINFVSTPSHTSFWERVNDAFIGEPEH
2I1W Chain:B ((2-266))
-----------KYMITSKGDEKSDLLRLNMIAGFG-EYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKY-----EATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKIHFARFRSF-PFWRRVHDSFIEDLEH
General information:
TITO was launched using:
RESULT:
Template:
2I1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144895 for 2061 contacts (-70.3/contact) +
2D Compatibility (PS) -28334 + (NN) -11675 + (LL) 1156
1D Compatibility (HY) -25200 + (ID) 6150
Total energy: -215098.0 ( -104.37 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_2I1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2I1W-query.scw
PDB file :
Tito_Scwrl_2I1W.pdb
: