Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDLEKIIKAIKSDSQ---NQNYTENGIDPLFAA-PKTARINIVGQAPGLKTQEARLYWKDKSGDRLRQWL---GVDEETFYHSGKFAVLPLDFYYPGKGKSGDLPPRKGFAEKWHPLILKEMPNV--QLTLLVGQYAQKYYLGSSAHKNLTETVKSYK-DYLPDYLPLVHPSPRNQIWLKKNPWFEKDLIVDLQKIVADILKD
1L9G Chain:A ((1-191))
MYTREELMEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLRESGIRREDVYICNVVKCRP----------PNNRTPTPEEQAACGHFLLAQIEIINPDVIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTFHPSYLLR---NRSNELRRIVLEDIEKAKSFIKKE
General information:
TITO was launched using:
RESULT:
Template:
1L9G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16848 for 1422 contacts (-11.8/contact) +
2D Compatibility (PS) -18866 + (NN) -1168 + (LL) 596
1D Compatibility (HY) -8000 + (ID) 1400
Total energy: -45686.0 ( -32.13 by residue)
QMean score : 0.336
(partial model without unconserved sides chains):
PDB file :
Tito_1L9G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L9G-query.scw
PDB file :
Tito_Scwrl_1L9G.pdb
: