Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVVPVMPRS----LEEAQEIDLSKFDSVDIIEWRADALPK-DDIINVAPAIFE-KFAGHEI--IFTLRTTREGGNIVLSDAEYVELIQKINSIYNPDYIDFEYFSHKEVFQEMLEFPN-----LVLSYHNFQETP--ENIMEIFSELTALAPRVVKIAVMPKNEQDVLDVMNYTRGFKTINPDQVYATVSMSKIGRISRFAGDVTGSSWTFAYLDSSIAPGQITISEMKRVKALLDAD
4H3D Chain:B ((21-253))
-KICVPIIGKNKKDIIKEAKEL---KDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLHKS
General information:
TITO was launched using:
RESULT:
Template:
4H3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102690 for 1714 contacts (-59.9/contact) +
2D Compatibility (PS) -24457 + (NN) -17208 + (LL) 280
1D Compatibility (HY) -21200 + (ID) 4200
Total energy: -169475.0 ( -98.88 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_4H3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3D-query.scw
PDB file :
Tito_Scwrl_4H3D.pdb
: