Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYKDYTGLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQLDP-DLKKWGNNIWHGLVGIYKIQEDLAIKDQ-DILAAIAKHTVGSAQMSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKAVAYETARTVSFLASKAQPIYPKTIETYNAYIPYLD
2O08 Chain:A ((2-186))
--------MNRGKALQLVKPHLTEHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEMRTLIRE-KLSQQDILFYGDELLHAPCGAYYVREEVGIE-DEDVLQAIRFHTTGRPNMSLLEKIIFLADYIEPNRQFPGVEKVRTQAKTDLNGAIISSLVNTITFLLKKNQPIYPDTLATYNQLLLEQ-
General information:
TITO was launched using:
RESULT:
Template:
2O08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103109 for 1483 contacts (-69.5/contact) +
2D Compatibility (PS) -19564 + (NN) -9020 + (LL) 504
1D Compatibility (HY) -15200 + (ID) 3950
Total energy: -150339.0 ( -101.37 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_2O08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O08-query.scw
PDB file :
Tito_Scwrl_2O08.pdb
: