Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLSWEDYFMANAELISKRSTCDRAFVGAVLVKNNRIIATGYNGGVSETDNCNEVGHYMEDGHCIRTVHAEMNALIQCAKEGISTNNTEIYVTHFPCINCTKALLQAGVKKITYKANYRPHPFAIELMEAKGVAYVQHDVPEVTLGMEE
2HVV Chain:B ((39-181))
---LSWQDYFMANAELISKRSTCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPFAIELMTQKEVEYVQHDVPRVKL----
General information:
TITO was launched using:
RESULT:
Template:
2HVV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77822 for 1125 contacts (-69.2/contact) +
2D Compatibility (PS) -16014 + (NN) -10223 + (LL) 472
1D Compatibility (HY) -20000 + (ID) 6200
Total energy: -129787.0 ( -115.37 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_2HVV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HVV-query.scw
PDB file :
Tito_Scwrl_2HVV.pdb
: