Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYFLDTADVSEIRRLNRLGIVDGVTTNPTIISREGRDFKEVINEICQIVDGPVSAEVTGLTCDEMVTEAREIAKWSPNVVVKIPMTEEGLAAVSQLSKEGIKTNVTLIFTVAQGLSAMKAGATFISPFVGRLEDIGTDAYALIRDLRHIIDFYGFQSEIIAASIRGLAHVEGVAKCGAHIATIPDKTFASLFTHPLTDKGIETFLKDWDSFKKK
1VPX Chain:R ((13-224))
MKIFLDTANLEEIKKGVEWGIVDGVTTNPT------AEFKQRVKEICDLVKGPVSAEVVSLDYEGMVREARELAQISEYVVIKIPMTPDGIKAVKTLSAEGIKTNVTLVFSPAQAILAAKAGATYVSPFVGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIAASIRHPMHVVEAALMGVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWKKYLEN
General information:
TITO was launched using:
RESULT:
Template:
1VPX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152574 for 1681 contacts (-90.8/contact) +
2D Compatibility (PS) -22552 + (NN) -7545 + (LL) 412
1D Compatibility (HY) -24400 + (ID) 5500
Total energy: -212159.0 ( -126.21 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_1VPX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VPX-query.scw
PDB file :
Tito_Scwrl_1VPX.pdb
: