Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLKQAFIENDSIRLKLSASDWKEAIKLSIDPLIESGAVDAEYYDAIIES-TEEFGPYYILMPGMAMPHARPEAGVKRDAFSLITLTEPVVFPDG--KEVSVLLALAATSSAIHTSVAIPQIIALFELENSIQRLTECQEAKEVLAMVEESKNSPYLEGLDLES
3OXP Chain:A ((4-149))
--MLKTLLTSDVIQVVSQAKDWRDAIAISCQPLIDNGAVEARYVEAIYRSHE-AIGPYYVVGPGIAMPHARPEDGVNRLSLALTVITEGVTFNAEGNDPVKLLIVLAATDSNSHIE-AISQLAQLFDTASDVQALLNAKTPQDILSVIARY-------------
General information:
TITO was launched using:
RESULT:
Template:
3OXP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112383 for 1120 contacts (-100.3/contact) +
2D Compatibility (PS) -14984 + (NN) -2694 + (LL) 792
1D Compatibility (HY) -14400 + (ID) 2850
Total energy: -146519.0 ( -130.82 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_3OXP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OXP-query.scw
PDB file :
Tito_Scwrl_3OXP.pdb
: