Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ME-TNNHFFYVVKCKDNSWYAGYTNDLHKRVKTHNDGKGAKYTKVRR--PVELIFAESF--STKREAMQAEYYFKKL-TRKKKELYIEEKRNSKEAVYVKAPNEL
2PD1 Chain:A ((1-103))
GHMTKLALFVRLEAKPGQ-EAALADFLASALPLANAESGTTAWFALKFGPSTFGVFDAFADEAGRQAHLNGQIAAALMANAATLLSSPPNIEKVELLAAKLPAG-
General information:
TITO was launched using:
RESULT:
Template:
2PD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4188 for 637 contacts (6.6/contact) +
2D Compatibility (PS) -10154 + (NN) -934 + (LL) 332
1D Compatibility (HY) 400 + (ID) 800
Total energy: -6968.0 ( -10.94 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_2PD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PD1-query.scw
PDB file :
Tito_Scwrl_2PD1.pdb
: