Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYDFIYAAIGWHPVDAIDMTEEDLAWIKELSAH--EKVVAIGEMGLDYHWDKSPKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVG-GIMHCFTGSAEVARECMKMNFYLSFGGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRGKRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN
1ZZM Chain:A ((4-259))
RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHD--LPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLFNVP
General information:
TITO was launched using:
RESULT:
Template:
1ZZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162178 for 2229 contacts (-72.8/contact) +
2D Compatibility (PS) -27718 + (NN) -15738 + (LL) 248
1D Compatibility (HY) -13600 + (ID) 3750
Total energy: -222736.0 ( -99.93 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_1ZZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZZM-query.scw
PDB file :
Tito_Scwrl_1ZZM.pdb
: