Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHK----PARSCVEVARLPKDALVEIEVIALVK
3VCZ Chain:C ((26-152))
-TKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAIAVR-
General information:
TITO was launched using:
RESULT:
Template:
3VCZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56582 for 954 contacts (-59.3/contact) +
2D Compatibility (PS) -13189 + (NN) -3000 + (LL) 272
1D Compatibility (HY) -12400 + (ID) 3400
Total energy: -88299.0 ( -92.56 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_3VCZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VCZ-query.scw
PDB file :
Tito_Scwrl_3VCZ.pdb
: