Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MILVSSCLGGIECRYNGSHAASEKIRKLVDEKKAVMACPELLGGFSTPREPAEIIGGTGEDVLNGTAKIVTASGEDVTELYMEGAAKTLAYAKEINASAVILKENSPSCGSGFIYNGTFSGKKITGSGVTAALLKQAGYRVISENELNDIL
1XPJ Chain:A ((1-124))
MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQ--------------------LGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFY--------IDDRAVRPSEFASMNLEEIHQLFEKEKS
General information:
TITO was launched using:
RESULT:
Template:
1XPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10191 for 809 contacts (-12.6/contact) +
2D Compatibility (PS) -13583 + (NN) -6970 + (LL) 280
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -32714.0 ( -40.44 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_1XPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XPJ-query.scw
PDB file :
Tito_Scwrl_1XPJ.pdb
: