Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPW---LNQS-QNDFTFPSDTYLLLYFWSMSCPNCHQ-LTDKVL---QDIKDMNVKVIGVHVPYIE-EEKSMEVVLTYALDRGLAIPIVLDQNY------EIVTTCHVQGIPSFCLLSQYGQIITKTMGDVGWDKMLKKIAGL
3LOR Chain:A ((4-152))
---LDNAPLLE--LDVQEWVNHEGLSNEDL-RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGS-
General information:
TITO was launched using:
RESULT:
Template:
3LOR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122940 for 980 contacts (-125.4/contact) +
2D Compatibility (PS) -14449 + (NN) -7447 + (LL) 248
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -151388.0 ( -154.48 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3LOR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LOR-query.scw
PDB file :
Tito_Scwrl_3LOR.pdb
: