Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRLNRQFIRTQLIAQNILSKNAPAKRENATENPAAVLEKAYSRLKSQSSTGGINQFNYSKTSVSGNSGTFSKVYQSANDRTVTDTGEETVIQSQNPYESESDIRIKILDEKYSRMNAINKTKSDPLGYIKDKYQNSKSPYFRSDLSAA-ERQAAYDNETEWLFKGKAQNYNLQDA--VFRNVTFHGEVEAENEKVYQRGQVNQQLQVLLNRNHIHIPEGTELTFTITPIDYQVRVSGTDDQDLIKQIEQVLQSGDNSKELFLHIMKSQSSDSAQFSEEAYKKYQAAREMYEVTGYHLKDLEVIDGRYVTPEGRDLMDVYKEELEKDPVQKQTASYAISYYRSELSKIAEAGYNAIPDFILSIDYSNGSLRDVGQSKSYGTGDTGWLEALKRQTGVNY |
4NTC Chain:A ((2-326)) | MSIGKLLSNGALLVDVLIIGAGPAGLSTATGLAR-----------------------QLHTAVVFDSGVYRNAK-TQHMHNVLGWDHRNPAELRAAGRADLTTRYSTIQFQNSTIEAIRQVETNQLFEARDN--EGHSWYGRKVVLATGVRDIPLDIE----------GYSECWANGIYHCLFCDGYEE--------RG--QETVGVLALGPIANPARALHLARMALRLSESVTIYTNGNEQLAKEIQQAAEES------------PVGASGLKFEARPIRRFEKGDVAKTVIVHLGESESKTEGFLVYNPQTEVNGPFAKQLALNMTEGGDILTTPPFYETSVPGVFAVGDCATP------------LKAVTPAVSMGSLAAGGLVAQLQAQAL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NTC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 91861 for 2737 contacts (33.6/contact) +
2D Compatibility (PS) -32481 + (NN) 5142 + (LL) 4812
1D Compatibility (HY) -4000 + (ID) 2700
Total energy: 62634.0 ( 22.88 by residue)
QMean score : 0.059
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