Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVTLGYLRESLSNHLENEVCQRICKKMLAKRYANEEEFVKDLDDNEMSFLNHVLEKEIKYAQNE-QDQKRAKELNEVYELLL
3NXB Chain:A ((60-111))
---------------------SSMEKKLNGGLYCTKEEFVNDMK--------TMFRNCRKYNGESSEYTKMSDNLERCFHR--
General information:
TITO was launched using:
RESULT:
Template:
3NXB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7537 for 261 contacts (28.9/contact) +
2D Compatibility (PS) -5591 + (NN) -3495 + (LL) 2196
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -3153.0 ( -12.08 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_3NXB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NXB-query.scw
PDB file :
Tito_Scwrl_3NXB.pdb
: