Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIHLSILDQAPVSKGESPVTTLQHSVELAQLSEQWGYKRYWFAEHH---STKGLASTAPEIMIARIAAQTNTIRVGSGGVLLP-QYSPFKVAETFRQLEALYPNRIDLGVGRSPGGTTKTRLALTDGVKKSLTEFNRQLQDVSYFLTDSLPPDH-----PYAGIKAAPLIGTAPELWVLGLGENSARRAAHQGIGYVFGHFINPERGENAFRIYRESFRPSAHFSNPSALFTIFVICAKTDEEAEELALSQDLWLLRVGKGLDSRVPSIEEAKAHPYTASDKKLIEENRKRMVIGSPTTVKQQLLDLTGCYETNEIMVLCNVFDFEAKKESYERLAELFL-
1RHC Chain:A ((1-330))-MKTQIGYFASLEQ-----YRPMDALEQAIRAEKVGFDSVWVDDHFHPWYHDNAQSAQAWAWMGAALQATKKVFISTCITCPIMRYNPAIVAQTFATLRQMYPGRVGVAVGAGEAMNEVPVTGEWPSVPVRQDMTVEAVKVMRMLWESDKPVTFKGDYFTLDKAFLYTKPDDEVPLYFSGMGPKGAKLAGMYGDHLMTVAAAPSTLKNVTIPKFEEGAREAGK--DPSKMEHAMLIWYSVDPDYDKAVEALRFWAGCLVPSMFKYKVYDPKEVQLHANLVHCDTIKENY--MCATDAEEMIKEIERFKEA-GINHFCLGNSSPDVNFGIDIFKEVIPAVRD


General information:
TITO was launched using:
RESULT:

Template: 1RHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1795 -160880 -89.63 -502.75
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -89.63
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.448

(partial model without unconserved sides chains):
PDB file : Tito_1RHC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1RHC-query.scw
PDB file : Tito_Scwrl_1RHC.pdb: