Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQGLVLQLTRAGFLMLLWVFIWSVLRILKTDIYAPTGAVMMRRGLALRGTLLGARQRRHAARYLVVTEGALTGARITLSEQPVLIGRADDSTLVLTDDYASTRHARLSMRGSEWYVEDLGSTNGTYLDRAKVTTAVRVPIGTPVRIGKTAIELRP
2KFU Chain:A ((53-147))
----------------------------------------------------------PGSALLVVKRGPNAGSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVNREPVD-SAVLANGDEVQIGKFRLVFL-
General information:
TITO was launched using:
RESULT:
Template:
2KFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78071 for 790 contacts (-98.8/contact) +
2D Compatibility (PS) -9770 + (NN) 1547 + (LL) 5780
1D Compatibility (HY) -5600 + (ID) 1650
Total energy: -87764.0 ( -111.09 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_2KFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KFU-query.scw
PDB file :
Tito_Scwrl_2KFU.pdb
: