Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAME-TDAETLAEAILLTADVSCLKALLEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR
1YBX Chain:A ((72-130))
----------SAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEA-LRKADEMVTAEIS--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29985 for 328 contacts (-91.4/contact) +
2D Compatibility (PS) -6553 + (NN) -6207 + (LL) 2544
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -41851.0 ( -127.59 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_1YBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBX-query.scw
PDB file :
Tito_Scwrl_1YBX.pdb
: